The Automated Microarray Pipeline is a series of programs that allow the automated normalization and web publication of microarray data. Data stored in a MADAM-compliant database, like that provided with MADAM, can be automatically downloaded, normalized - [Read more]

Michael Eisen's software at Stanford - includes ScanAlyze, Cluster and TreeView. - [Read more]

The Microarray Data Manager, implemented in Java, facilitates the entry of data into a relational database. MADAM guides users through the microarray process from RNA procurement to data analysis, offering intelligent forms to simplify the tracking of exp - [Read more]

TIGR?s Microarray Data Analysis System, a Java application, provides users an intuitive interface to design analysis protocols combining one or more normalization and filtering steps. In this way, data from many individual hybridizations can be treated - [Read more]

NetAffx™ Analysis Center from Affymetrix enables researchers to correlate GeneChip® microarray data results with array design and annotation information. - [Read more]

Software Utilites for DNA Microarray. ExpressConverter and SlideMap. - [Read more]

Normalized and filtered expression files can be analyzed using TIGR Multiexperiment Viewer (MeV). MeV is a versatile microarray data analysis tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis - [Read more]