Among 23 databases, 4 were evaluated precisely (BASE, GeneTraffic, MaxD, RAD ). Analysed according ot MGED standards. Review. Transcriptome.ens.fr. Sophie Lemoine - [Read more]

Acuity 4.0 - Enterprise Microarray Informatics. cross-platform support, data warehousing, and new enabling analysis and visualization tools. Molecular Devices. - [Read more]

Agilent Data Analysis. Software. ChIP Analytics Software • CGH Analytics Software • Feature Extraction Software • GeneSpring GT • GeneSpring GX • GeneSpring Workgroup • Rosetta Resolver® System - [Read more]

The Automated Microarray Pipeline is a series of programs that allow the automated normalization and web publication of microarray data. Data stored in a MADAM-compliant database, like that provided with MADAM, can be automatically downloaded, normalized - [Read more]

Argus - a microarray database software system which functions to process, analyze, manage, and publish microarray data. Comander et al. A new database system for web-based analysis of multiple microarray datasets. Genome Research 2001 11(9):1603-1610. - [Read more]

Arrayplot allows for rapid graphical visalisuation and normalisation of microarray data. Also provides a user-friendly interface to visualise data distribution and to view most variant genes. Permits to calculate normalisation factor based on overall median intensity. Arrayplot. Free software! - [Read more]

Microarray Image Analysis Software. A software package developed for the quantification of gene expression arrays. AlphaInnotech - [Read more]

Michael Eisen's software at Stanford - includes ScanAlyze, Cluster and TreeView. - [Read more]

Doelan is an automated tool which checks the quality of produced DNA microarrays. Software is based on the execution of TestSuites on quality control data to validate batches of chips. - [Read more]

Enterprise wide solution for automating and repeating tasks in data processing, analysis and interpretation from diverse data formats (all microarray formats, Mass Spectrometry, 2D Gel). - [Read more]

GenePix Pro 6.0 for Microarray Image Analysis for microarrays, tissue arrays and cell arrays. New spot-finding algorithms, full spot finding automation, Automatic balancing of PMT gain for all GenePix scanners, Batch Analysis tab for browsing and analyzing batches of images, Morphological background subtraction, support for opening and analyzing third-party images. Molecular Devices. - [Read more]

GeneTraffic Version 3.2. Centralized data management for all microarray platforms, Powerful, easy-to-use microarray data analysis tools, Seamless Affymetrix™ integration and analysis (PLIER, GC-RMA, RMA), Rich MIAME-compliant experiment annotation. - [Read more]

GEPAS - Gene Expression Pattern Analysis Suite - [Read more]

The Microarray Data Manager, implemented in Java, facilitates the entry of data into a relational database. MADAM guides users through the microarray process from RNA procurement to data analysis, offering intelligent forms to simplify the tracking of exp - [Read more]

MAGE Software Toolkit: MAGE-stk. MAGE Object Model. Sourceforge. - [Read more]

Micovito - Microarray Comparison Visualization Tool. A tool enabling intuitive understanding of data as a first step into comparison of microarray experiments. Visualization of groups of genes whose expression profiles are similar in both microarray experiments, but also genes whose expression profiles are similar in one microarray experiment but not in the other. Micovito - [Read more]

Microarray Explorer (MAExplorer) is a Java-based data-mining facility for cDNA or oligonucleiotide microarray databases. MAExplorer - [Read more]

TIGR?s Microarray Data Analysis System, a Java application, provides users an intuitive interface to design analysis protocols combining one or more normalization and filtering steps. In this way, data from many individual hybridizations can be treated - [Read more]

PARTISAN arrayLIMS. Clondiag chip technologies. arrayLIMS is designed to manage all pertinent issues in the microarray life cycle, including array design, microarray production, biochemical reactions (hybridization), chip detection (image scanning/acquisition), data analysis and data mining. - [Read more]

Rosetta Resolver System. Includes the Rosetta Syllego system for the management of genetic data and analysis. For drug discovery - Determine and validate targets, Prioritize compounds, Pinpoint on- and off- target treatment effects, Determine underlying treatment mechanisms of action. Rosetta Inpharmatics - [Read more]

Signet Agilent. - [Read more]

Software Utilites for DNA Microarray. ExpressConverter and SlideMap. - [Read more]

Normalized and filtered expression files can be analyzed using TIGR Multiexperiment Viewer (MeV). MeV is a versatile microarray data analysis tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis - [Read more]

VARAN - a tool for analyzing variability amongst DNA microarrays experiments. Published in Bioinformatics : http://bioinformatics.oupjournals.org/cgi/content/abstract/bth117?ijkey=863IeHRtnwjmk&keytype=ref - [Read more]

yMGV - Yeast Microarray Global Viewer - an on-line database, provides a synthetic view of the transcriptional expression profiles of yeast genes among most of the published expression datasets. yMGV - [Read more]

yTAFNET is designed to help the characterization of connections between the different yeast regulatory networks. - [Read more]