Primer and Oligo Design Tools Udžbenik i oligo Design Tools
Primer Design Tools and Oligo Software : Udžbenik Design Tools i oligo Softver:
Software, programs, and online bioinformatic tools for the design of primers and oligonucleotides. Software, programi, bioinformatika i online alati za oblikovanje početnice i oligonucleotides.
We recommend the following: Preporučujemo slijedeće:
Array Designer Premier Biosoft International. Array Designer Premier Biosoft International. Software which can design primers for DNA or oligo arrays. Softver koji se dizajn početnice za DNA ili oligo nizovi.
Beacon Designer Premier Biosoft International. Beacon Designer Premier Biosoft International.
OligoArray2.1 OligoArray 2.0 and the new version 2.1 are free software packages that compute gene specific oligonucleotides for OligoArray2.1 OligoArray 2,0 i 2,1 su nove verzije paketa slobodnog softvera koji compute gena specifičnih za oligonucleotides
genome-scale oligonucleotide microarray construction. genom-scale oligonucleotide microarray construction. Reference [ PubMed ] Free Reference [PubMed] Free
Oligodb - Oligodb is a web-based program for the interactive design of DNA oligos for transcription profiling and hybridization of human genes. Oligodb - Oligodb je web-based program za interaktivni dizajn transkripcija DNA oligos za profiliranje i hibridizacija ljudskih gena. The oligodb program determine oligos using human DNA-transcript data from ENSEMBL. The oligodb program utvrdili oligos pomoću ljudske DNA-prijepis podataka iz ENSEMBL. Reference [ PubMed ][ pdf ] Reference [PubMed] [pdf]
OligoPicker - OligoPicker can select up to five oligo probes for each of the DNA sequences you provide for microarray spotting. OligoPicker - OligoPicker možete odabrati do pet oligo proba za svaku od DNA sekvenci koje ste dali za microarray uočavanje. Reference [ PubMed ] Free Reference [PubMed] Free
PrimerQuest Free PrimerQuest Free
Genome-wide Automated Primer finder servers (GAP) Software which can design thousands of primer pairs to amplify a set of open reading frames (ORFs) covering a whole genome. Free Genocid-wide Automated Primer tražilo poslužitelji (GAP) Software koji može dizajn na hiljade parova prvog do povećati skup otvoren čitanje okvira (ORFs) pokriva cijeli genom. Besplatni
Genome PRIDE GenomePRIDE is a primer design software tool that designs PCR primers or long oligos based on annotated sequences. Genocid PRIDE GenomePRIDE je fitilj dizajn softver alat koji dizajnira PCR početnice ili dugo oligos na temelju označeni sekvenci.
GenomePRIDE has been used for the design of many DNA arrays/chips. Free GenomePRIDE je korišten za izradu mnoge DNA nizovi / čips. Besplatni
Primer3 Whitehead Institute/MIT Center for Genome Research, Free Primer3 Instituta Whitehead / MIT Centar za Genome Research, Free
Primer Premier Premier Biosoft International. Udžbenik Premier Premier Biosoft International.
PRIMEGENS - Primegens (Primer Design Using Gene Specific Fragments) is a computer program which you use selected gene-specific fragments and then it designs primer pairs for PCR amplifications. PRIMEGENS - Primegens (Primer Design Korištenje Gene Specifične Ulomci) je računalni program koji ste odabrali koristiti specifične gene-fragmenti, a zatim ga dizajnira prvog para za PCR amplifications. Reference [ PubMed ] Reference [PubMed]
ProbeWiz Server - The CBS ProbeWiz WWW server predicts optimal PCR primer pairs for generation of probes for cDNA arrays. ProbeWiz Server - CBS ProbeWiz WWW servera predviđa optimalno PCR prvom generacijom parova za probe za cDNA nizovi. Reference [ PubMed ] Reference [PubMed]
ProMide - ProMide is a collection of command-line tools for Probe selection and Microarray Design. Free ProMide - ProMide je zbirka command-line alata za provjeru i odabir Microarray Design. Besplatni
Sarani - Sarani Gold (Genome Oligo Designer) is a software for automatic large-scale design of optimal oligonucleotide probes for microarray experiments. Sarani - Sarani Gold (Genocid oligo Designer) je softver za automatske velikih razmjera dizajn optimalnih oligonucleotide probe za microarray eksperimenata. Thousands of gene sequences can be analyzed together and best available oligonucleotide probes with uniform thermodynamic properties and minimal similarity to non-specific genes can be selected. Tisuće sekvence gena može biti analizirani zajedno i najbolje dostupne oligonucleotide probe s odori termodinamičkih svojstva i minimalan sličnosti da ne-specifični geni mogu biti odabrani. Product of Strand Genomics . Proizvod Strand genomiku.
STACKdb - The STACKdb, Sequence Tag Alignment and Consensus Knowledgebase, is generated by processing EST and mRNA sequences obtained from Genbank through a pipeline consisting of masking, clustering, alignment and variation analysis steps. STACKdb - STACKdb, Sequence Tag podešavanje i konsenzus Knowledgebase, je generirana sa obradom EST i mRNA sekvence dobiveni iz Genbank kroz cjevovod sastoji od masking, skupina, usklađivanje i analiza varijacija korake. The STACKdb database is created using tools called "stackPACK". The STACKdb baza podataka je kreirana korištenjem alata pod nazivom "stackPACK". Also available through Electric Genetics . Free Također je dostupno putem Electric genetiku. Besplatni
Visual OMP - Visual OMP picks primers and oligo probes which do not cross hybridize with each other and other targets. Visual OMP - Visual OMP pijucima početnice i oligo probe koja ne prelaze hybridize međusobno i drugih ciljeva. Uses the OMP (Oligonucleotide Modeling Platform) engine, based on scientific research by nucleic acids thermodynamics expert, Dr. John SantaLucia. DNA Software, Inc . Koristi OMP (Oligonucleotide Modeling Platforma) motor, na temelju znanstvenih istraživanja od strane stručne nukleinske kiseline Termotehnika, Dr. John SantaLucia. DNA Software, Inc.
Xpression Primer Premier Biosoft International. Xpression Primer Premier Biosoft International.
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