DNA Microarray Bioinformatics


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DNA Microarray Vendors and Products

DNA Microarray Bioinformatic Tools on the Internet:

Also see our Microarray Bioinformatics and Microarray Software Database.

Bioconductor

BioConductor is an open source software project which is under open development, for the analysis and comprehension of genomic data.

Bioconductor 1.7 Packages - Many DNA Microarray Tools and Software

Gene-Hopping Alternative for Gene Hopping

GeneHopping identifies sets of genes which are co-regulated between organisms and provides visualization of common modules.

Gene Ontology Term Finder Gene Ontology Term Finder-2

The Gene Ontology consortium classifies each gene in the genome using a controlled vocabulary. The Term finder tool identifies enriched GO terms within groups of selected genes. The GO Term Finder tool searches for significantly shared GO terms, or parents of the GO terms, used to describe the genes in your list to help you discover what the genes may have in common.

Gene Pattern

MIT-based software which allows software analysis and visualization of data from microarray experiments. Performs sequence and microarray analysis.

GeneXpress

GeneXpress implements a gene modules map, implements module networks, and identifies enriched transcription factor binding sites.

Onto-Tools

Onto-tools is a web-based program which allows one to identify GO term enrichment, map probes on different DNA platforms or chips, and retrieve annotations of specific genes on the DNA microarray matrix.

Supervised Analysis of DNA Microarray Data

Tool Cluster

A tool to perform hierarchical clustering. Samples and genes in a microarray experiment are organized by similarity

Microarray Types and Info

Using Microarrays

DNA Microarray Bioinformatics

DNA Microarray Protocols